Shopify Inventory Transfers
Setup, Tips & Best Practices

We cover how to set up, track, and optimize Shopify inventory transfers.
Learn how to automate them using advanced Shopify apps such as Prediko.

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Scaling a Shopify store means more orders, more stores, more warehouses, and more chances for inventory to end up in the wrong place.

Even with solid forecasting, stock doesn’t always land where it’s most needed. One location might be sitting on excess inventory, while another is struggling to fulfill orders.

That’s where Shopify inventory transfers become essential. 

Instead of rushing to reorder or risking lost sales, you can simply shift existing stock between locations to fix allocation issues, meet demand, and stay efficient.

We break down how inventory transfers work, when to use them, and how to make the process seamless, especially if you're running on Shopify.

Understanding Shopify Inventory Transfers

Inventory transfers in Shopify refer to the process of moving stock from one location to another, be it from a central warehouse to a retail store or between two fulfillment centers.

The main purpose of inventory transfers is to rebalance stock across locations based on changing demand, inventory levels, or fulfillment needs.

This is important for multi-location Shopify brands. 

Benefits of Shopify Inventory Transfers for Multi-Store Management

Inventory transfers make multi-store inventory management easier and more efficient. Here's how: 

1. Prevents stockouts without placing new POs

Inventory transfers let you shift existing stock between locations instead of placing new POs to reorder from suppliers. 

This means you can quickly respond to a stockout risk in one store by pulling excess from another, avoiding missed sales and shipping delays. 

2. Reduce Overstock and Holding Costs

If one location is overstocked with inventory that isn’t moving, you’re paying unnecessary storage, insurance, and potential markdown costs. 

Moving stock to a higher-demand location helps keep inventory flowing while reducing the risk of spoilage, waste, or costly write-offs.

3. Improve Fulfilment speed

By keeping high-demand products stocked at the right location, the orders are fulfilled faster and closer to the customer. 

This translates to shorter shipping times, lower logistics costs, and a smoother post-purchase experience, especially important for Shopify brands offering fast or local delivery.

4. Helps maintain a consistent customer experience

Nothing’s more frustrating than telling a customer a product is out of stock even when it’s available in another location. 

Transfers maintain consistent availability across all your stores, reducing the chance of abandoned carts, negative reviews, or lost loyalty.

5. Goods receipt and quality control

Customer demand can shift quickly due to seasonality, trends, or promotions. Inventory transfers give you the flexibility to react in real time, moving stock where it’s needed most without waiting on supplier lead times or new production runs.

Setting Up Shopify Inventory Transfers

Before you can start using inventory transfers in Shopify, you’ll need to configure your store’s locations and enable inventory tracking. Here’s how to set it all up. 

1. Enable inventory tracking for products

Shopify inventory transfers only work for products with inventory tracking enabled.

  • Go to Products in your Shopify admin
  • Click on a product
  • In the Inventory section, check "Track quantity"
  • Save your changes

Repeat for all products you want to include in transfers.

2. Set up multiple locations

You need at least two active locations (e.g., warehouse, retail store, 3PL) to transfer inventory between them.

  • Go to Settings > Locations in your Shopify admin
  • Click Add location
  • Enter the name, address, and details for each physical or virtual location
  • Make sure each location is active and fulfills online orders, if applicable
  • Save each one

Note: Shopify supports up to 1,000 locations depending on your plan.

Assign inventory to locations

Once your locations are set up, assign inventory to them

  • Go to Products > Inventory
  • Select a product and click on its details
  • Under the Inventory section, adjust quantities for each location
  • Click Save

This helps Shopify recognize where your stock is stored and allows you to initiate transfers accordingly. Make sure each product has inventory assigned to the correct locations.

Tip: Keep stock levels updated manually across locations or via an inventory management app like Prediko for real-time syncing.

Set user permissions (If needed)

If you're working with a team, make sure relevant team accounts have permission to manage inventory and transfers.

  • Go to Settings > Users and permissions
  • Choose a staff account
  • Ensure Products and Inventory permissions are enabled

Set priority for fulfillment location

In Settings > Locations, click on Edit fulfillment priority to reorder your locations. This will set the shipping priority that Shopify will use to fulfill online orders.

It's not strictly required, but it streamlines automatic allocation and dispatch.

Creating an Inventory Transfer on Shopify

Once your inventory locations are set up in Shopify, creating a transfer is the next step to balancing stock across locations. 

Here’s how to do it in a few clicks. 

1. Selecting the Source and Destination locations

  • From your Shopify admin, go to Products > Transfers
  • Click Create transfer
  • In the Origin section, select the location you're transferring stock from (e.g., your main warehouse)
  • In the Destination section, select the location you're transferring stock to (e.g., a retail store or 3PL)

2. Entering product details and quantities

In the Add products section, search or browse for the SKUs you want to include in the transfer. Once added, enter the quantities for each product under the Quantity column.

Tip: Make sure your inventory levels are updated in each location to avoid inconsistencies or errors during the transfer.

3. Reviewing and confirming the transfer details

Before saving the transfer, you can

  • Add a reference name to easily identify the transfer later
  • Add tags for better organization and filtering
  • Include notes (e.g., reason for transfer or special handling instructions)
  • Adjust the creation date if needed

Once everything looks good, click Save. The system will save your transfer as a draft. 

4.Processing your Transfer

Once the items are ready to move, you’ll need to process the transfer by updating its status. 
From Products > Transfers, click the transfer you want to process

Click Mark as, then choose one of the following options

  • Ready to ship: Reserves inventory at the origin location. A shipment can now be created.
  • In progress: Marks inventory as in transit. It’s also marked as incoming at the destination.
  • Transferred: Immediately receives and makes inventory available at the destination location.

Click Save to confirm the action.

Once you process the transfer, you can no longer change the origin or destination, but you can still edit products, notes, or tags.

How to handle backorders and partial transfers?

Shopify does not automatically reserve stock for transfers. If the origin location doesn’t have enough available inventory, you’ll see an error or an incomplete transfer status.

To handle this

  • Adjust quantities to match available inventory
  • Wait until restocks arrive, then complete the transfer
  • Consider doing a partial transfer and initiating another one later for the remaining items.

By using inventory transfers regularly, you can fix stock imbalances quickly, reduce the need for emergency reordering, and keep your fulfillment running smoothly, especially across multiple Shopify stores or warehouses.

One common reason transfers fail or stock appears missing? It’s not actually being tracked in Shopify. 

Here’s how to fix the inventory not tracked issue.

Managing and Tracking Shopify Inventory Transfers

Once a transfer is initiated, it’s just as important to monitor its progress, keep records accurate, and use the data to optimize future allocation decisions. 

Shopify offers some features to help you stay on top of inventory transfers across all your locations.

1. Monitoring transfer status and progress

After creating a transfer, you can track its status from the Products > Transfers section in your Shopify admin. Each transfer will show a status such as

  • Draft: Transfer created but not yet marked as ready to ship. No inventory is reserved at this stage.
  • Ready to ship: The transfer is prepared, and inventory has been reserved at the origin location.
  • In progress: The inventory is marked as in transit. All shipments associated with the transfer are on their way to the destination.
  • Transferred: The inventory has been fully received at the destination and is now available for sale or fulfillment.
  • Canceled: The transfer has been canceled, and any reserved inventory is returned to the origin location's available stock.

You can click into each transfer to view

  • Origin and destination details
  • List of products and quantities
  • Notes, tags, and creation date
  • A history log of received quantities

This helps you stay organized and catch any discrepancies early.

2. Utilizing Shopify’s reporting

While Shopify’s built-in reports are somewhat limited, you can still gain useful insights by

  • Exporting transfer data to CSV for deeper analysis
  • Manually tracking which locations frequently require transfers (a sign of poor initial allocation)
  • Identifying slow-moving stock that may be better placed elsewhere
  • Monitoring transfer frequency to detect operational inefficiencies

For more advanced and automated reporting, use tool like Prediko can layer in real-time forecasting and location-level insights to improve future allocation planning.

Efficient transfers are only one piece of the puzzle. Learn how to allocate inventory in the first place with our full guide. 

3. Ensure accurate transfer records

To keep your inventory data clean and actionable

  • Always mark items as received once they arrive at the destination so that stock levels update correctly
  • Use notes and tags to track why transfers were initiated (e.g., seasonal restock, urgent fulfillment, overstock correction)
  • Regularly audit transfers so quantities match physical stock
  • Assign internal owners to each transfer to maintain accountability
  • Review transfer trends monthly to identify preventable errors or recurring issues

Receiving and Completing Transfers

Once inventory arrives at the destination location, it’s crucial to mark it as received in Shopify to maintain accurate stock levels and avoid fulfillment issues. Here's how to finalize your transfer process smoothly.

1. Mark transfer as Received 

  • Go to Products > Transfers in your Shopify admin
  • Click on the specific transfer you want to update
  • Under each product listed, enter the actual quantity received
  • If you’ve received all items, click Mark as received to complete the transfer.

Shopify will automatically update the inventory at the destination location.

2. Verify the inventory quantities upon receipt

Don’t skip this. Physically count the items before marking them as received. This helps

  • Prevent discrepancies between systems and shelves
  • Catch damages or missing units before they affect your orders
  • Ensure team accountability across warehouses or store locations

3. Resolve discrepancies and update stock levels

If the received quantities don’t match the original transfer

  • Update the received quantity manually in the transfer
  • Use the Notes section to document issues (e.g., damaged, short-shipped)
  • If necessary, initiate a follow-up transfer or reconcile with the origin location

Accurately receiving inventory ensures your Shopify reports reflect real-time availability, and your customers don’t face unexpected stockouts or delays.

Want to get ahead of stockouts before they cost you? Read our full guide on how to not run out of stock.

Advanced Tips for Multi-Store Inventory Management

Now that we’ve covered how to set up and manage inventory transfers in Shopify, let’s go a step further. 

If you’re scaling across multiple stores or warehouses, these advanced strategies will help you stay ahead of demand, avoid stockouts, and expedite operations.

1. Automate inventory transfer using Shopify apps

Manually transferring stock between locations can be time-consuming and error-prone. 

Shopify apps, like Prediko, allow you to set up automated rules or alerts for low-stock thresholds at each location and give visibility into overstocked SKUs, so you can trigger transfers proactively.

This way, the inventory moves where it’s needed, without a lot of intervention, saving time, reducing stockouts, and keeping inventory balanced across your stores.

2. Unify inventory data across locations

Avoid siloed systems. Use a centralized inventory platform like Prediko that syncs inventory in real time across all Shopify stores, warehouses, and even POS. 

This eliminates data discrepancies and lets you do smarter allocation.


3. Optimize inventory distribution across stores

Different stores = different demand patterns. Forecast demand at the location level using historical data, seasonality, and local trends so that each store is stocked based on its actual velocity.

Prioritize high-performing stores and fulfillment centers to reduce overstocks in slower regions and improve delivery speed to customers.

With Prediko, plan inventory by location. Its AI algorithm takes into account store-level demand, supplier lead times, and sales velocity, so you always know what to stock, where, and when.

4. Integrate with third-party inventory management tools for smarter operations

While Shopify’s built-in features work for simple operations, growing brands often need more flexibility. 
Integrating with an advanced inventory management tool like Prediko gives you 

Using Prediko, you can even create inventory transfers directly within Shopify, so you’re not constantly switching between tools or tabs. 

It becomes your HQ for all things inventory management.

Handle Shopify Inventory Transfers The Smart Way

Inventory transfers are a powerful way to fix stock allocation issues, especially when you're managing multiple stores, warehouses, or sales channels. 

Whether it's redistributing slow-moving SKUs or rushing products to high-demand locations, transfers help you stay agile and serve your customers better.

But while Shopify makes it possible to handle transfers manually, doing it all by hand quickly becomes time-consuming and error-prone as your operations scale.

That’s where you need a tool like Prediko that doesn’t just track your inventory, it helps you act on it. From showing you which SKUs are overstocked or at the risk of stockout to letting you create Shopify transfers directly within the platform, it becomes your go-to app for smarter inventory allocation and faster decision-making.

If you’re serious about growing your multi-store Shopify business without growing the chaos, start a free 14-day trial of Prediko.

Frequently Asked Questions

How do I create and manage inventory transfers in Shopify?

Go to Products > Transfers in your Shopify admin. Click Create transfer, choose the origin and destination, add products and quantities, and click Save. You can later update the transfer status (e.g., ready to ship, in progress, or transferred) to track progress.

What are the steps to track inventory transfers between locations in Shopify?

Once a transfer is created and processed, Shopify updates its status as Draft, Ready to Ship, In Progress, Transferred, or Canceled. You can view and manage transfer progress under the Transfers tab, including shipment details and received inventory.

How can I troubleshoot issues with Shopify inventory transfers?

Common issues include incorrect locations, missing product variants, or stock not updating. Double-check location settings, ensure products are trackable, and confirm SKUs exist in both locations. If problems persist, review Shopify’s transfer status or use an inventory app like Prediko for added visibility.

Can I automate inventory transfers in Shopify?

Shopify’s native system doesn’t support full automation, but apps like Prediko let you set low-stock alerts, view overstocked SKUs, and suggest transfers, so you can act proactively and save time.

What are the best practices for managing inventory transfers in Shopify?

  • Use clear reference names and notes for every transfer
  • Set low-stock thresholds to trigger timely transfers
  • Regularly review transfer statuses and records
  • Keep products synced across locations
  • Consider an inventory tool to streamline tracking and reporting

Learn More About Inventory Management on Shopify

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